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their should be some screws that are the shape of a hex. they raise the board a couple of millimeters off of the case. i think the washers just go on top.....sorry no pics...its been about 2 years since i did it to mine
sounds like your front panel switch isn't hooked up to the frontpanel IO on your mobo.. i had the same problem when i got a new case for the GF's puter. what mobo is it BTW?