I was correct on the tightness of the main's, it was out way beyond the acceptable tolorance.
My machineist will be shaving 1-2 thousandts off of the flat point of my main caps which will bring in the center point and then the block will be align bored to correct the issue.
I hope to have the block back next week some time with the new clearances of:
1: .0015
2: .0015
3: .0017
4: .0015
5: .0015