Update,

I found where the IAT is hooked up, the dummies put it on the underside of the CAI down by the filter. Also found the problem with the primary O2 sensor, all the wires are cut and found the harness wires taped and tucked on the fire wall harness. these guys must of been real professionals :P. I also have located 6 other terminated wires and have been hunting them down through different manuals because some of the harness is integra other parts of the harness are civic, this whole wire coding thing is gonna drive me nuts. Now im going to tear down the front of the motor and see what I gotta do for the crank sensor. If anyone knows if it is possible to add a crank sensor if the motor did not origonally come equiped with it please let me know because I have this strange feeling that the motor is an OBD I even though it is hooked up for OBD II. Thanks