Is anything missing off the body ?? i.e. sideskirts any body pieces???
Its missing the passenger Side Skirt, I spoke with my bro-in-law and he has a set of VIS mugen style sideskirts/rear valance painted, but these will cost separately.

Why was the motor changed to a jdm motor??? Why was it changed at all??
The stock motor blew because of the loose Timing Belt.

Is the clutch still good?? Is it the one that came with the motor or is it new??
Brand new tranny swap only a year and a half

Has the vehicle ever been wrecked?? Is the title clean (not salvage)
No wreckage, clean title

Is the rear trunk lock still there??? What if anything is cosmetically wrong with this car.
I beleive yes on the trunk lock, but will verify to make sure. Cosmetically its pretty clean, except the driver side headlight looks a bit dirty.

You say Tein suspension, just the springs or the full suspension. If springs are they on stock struts?? If so how is the ride?Are the tires flat?? one looks flat in the picture.
Tein Suspension HA Coilovers(Bro purchased used)

Anything else need converted besides the dash (auto-manual)???
So far only the dash as you mentioned

The only other thing is that the trunk has parts from the USDM engine inside the trunk from when B&T motorsports were working on the vehicle. as well as the passenger seat having acouple of peices of wiring hanging from under neath the dash. Most likely if you decide to purchase this vehicle and take it to B&T to finish up the work they will fix everything up from the inside out.

I will send you an email with my brother in laws phone number being that it is his car and you may speak to him directly in regards to the car itself.

edit: email sent