My civic ex is automatic and is my third honda. I had two other preludes before her and I can honestly say that I am not disapointed.
Point is. I was driving manuals when some of you were still in spelling class. And I like the comfort that my auto provides.
Don't get me wrong tho. I love manuals, and if I could afford it I'd have a new one right now. But reality kicks in.
Anyway. Go for the manual swap if you're really into it.
Naysayers never get anywhere.