Sounds like a great plan. And BTW shocks do WONDERS for your cars handling, even with stock springs. My car was vastly improved by my koni yellows, even before I got my ground controls. They dampen suspension travel, and reduce body roll. They improve every facet of performance, launching (not that it matters in a CX) and braking and handling. Plus with an adjusable shock, you can also alter the car's handling balance a little.

One thing though... If youve got all this money to spend, I would HIGHLY reccomend Koni Yellows. They are the best shock for civics on the market, IMO, and I'm very impressed with mine, having ridden on a few others.

:edit: I would also not bother with the brake pads until you actually get yourself some REAL brakes (i.e. teg swap, bbk). I usually only need to touch the brakes once or twice on the course in my VX, and your CX is even slower. Stock will be fine for now.